Software:Article Title: The Statistical Structure of the Hippocampal Code for Space as a Function of Time, Context, and Value.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GAD67, clone 1G10.2 (monoclonal antibody, mouse) Millipore Cat# MAB5406; RRID: AB_2278725 Goat anti-mouse IgG2a cross-adsorbed secondary antibody, Alexa Fluor 647 conjugated Thermo Fisher Scientific Cat# A-21241; RRID: AB_2535810 Experimental Models: Organisms/Strains Mouse: C57BL/6J-Tg(Thy1-GCaMP6f)GP5.17Dkim/J Janelia GENIE Project JAX: 025393 Mouse: C57BL/6 Charles River Laboratories C57BL/6NCrl Software and Algorithms MouseoVeR / Jovian (for virtual reality) Cohen et al., 2017 https://github.com/JaneliaSciComp/ CohenBolstadLee_eLife2017 MOCO (motion correction for imaging) Dubbs et al., 2016 https://github.com/NTCColumbia/moco ROI selection This paper https://github.com/LeeA-Lab/2P_ calcium_imaging
Article Title: Dynamic early clusters of nodal proteins contribute to node of Ranvier assembly during myelination of peripheral neurons
Article Snippet: DOI: https://doi.org/10.7554/eLife.68089 17 of 29 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Caspr (rabbit polyclonal) DR Colman 1:5000 Antibody Caspr (guinea-pig polyclonal) M Bhat, University of Texas, San Antonio 1:400 Antibody MBP (rabbit polyclonal) Vouyioukiis and Brophy, 1993 PJ Brophy, pep7 1:1000 Antibody Periaxin (rabbit polyclonal) Gillespie et al., 1994 PJ Brophy, Repeat region 1:5000 Antibody pERM (rabbit polyclonal) Cell Signalling Technologies Cat# 3141 1:200 Antibody Dystrophin (mouse monoclonal) Sigma-Aldrich (MANDRA1) Cat# D8043 1:200 Antibody Radixin (rabbit polyclonal) Sherman et al., 2012 P Brophy, RAD4 1:500 Antibody Neurofascin-Pan (rabbit polyclonal) Tait et al., 2000 PJ Brophy, NFC 1:2000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 488 Invitrogen Cat# A-21121 1:1000 Antibody Goat Anti-rabbit Alexa Fluor 647 Invitrogen Cat# A-32733 1:1000 Antibody Donkey Anti-rabbit Alexa Fluor 594 Jackson ImmunoResearch Cat# 111-585-14 1:1000 Antibody Donkey Anti-chicken Alexa Fluor 488 Jackson ImmunoResearch Cat# 703-545-155 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 568 Invitrogen Cat# A-21134 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 647 Invitrogen Cat# A-21241 1:1000 Antibody Goat Anti-mouse IgG2b Alexa Fluor 488 Invitrogen Cat# A-21141 1:1000 Antibody Anti-mouse IgG1 Alexa Fluor 594 Invitrogen Cat# A-21125 1:1000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 647 Invitrogen Cat# A-21240 1:1000 Antibody Goat Anti-mouse IgG2b DyLight 405 Jackson ImmunoResearch Cat# 115-475-207 1:100 Antibody Goat Anti-guinea pig Alexa Fluor 594 Invitrogen Cat# A-11076 1:8000 Antibody Goat Anti-rabbit Alexa Fluor 488 Invitrogen Cat# 710369 1:1000 Antibody Goat Anti-chicken Alexa-Fluor 647 Invitrogen Cat# A-21449 1:1000 Chemical compound, drug Phalloidin AlexaFluor 568 Invitrogen Cat# A-12380 1:50 Chemical compound, drug DAPI (4 0, 6-diamidino-2-phenylindole) Sigma-Aldrich Cat# D9542 1 mg/ml Chemical compound, drug BrainStain fluorescent dye mix ThermoFisher Cat# B34650 1:300 Chemical compound, drug DMSO Sigma-Aldrich Cat# D2650 Chemical compound, drug Poly-D-lysine Sigma-Aldrich Cat# P6407 Continued on next page Malavasi et al. eLife 2021;10:e68089.
Imaging:Article Title: The Statistical Structure of the Hippocampal Code for Space as a Function of Time, Context, and Value.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GAD67, clone 1G10.2 (monoclonal antibody, mouse) Millipore Cat# MAB5406; RRID: AB_2278725 Goat anti-mouse IgG2a cross-adsorbed secondary antibody, Alexa Fluor 647 conjugated Thermo Fisher Scientific Cat# A-21241; RRID: AB_2535810 Experimental Models: Organisms/Strains Mouse: C57BL/6J-Tg(Thy1-GCaMP6f)GP5.17Dkim/J Janelia GENIE Project JAX: 025393 Mouse: C57BL/6 Charles River Laboratories C57BL/6NCrl Software and Algorithms MouseoVeR / Jovian (for virtual reality) Cohen et al., 2017 https://github.com/JaneliaSciComp/ CohenBolstadLee_eLife2017 MOCO (motion correction for imaging) Dubbs et al., 2016 https://github.com/NTCColumbia/moco ROI selection This paper https://github.com/LeeA-Lab/2P_ calcium_imaging
Article Title: Dynamic early clusters of nodal proteins contribute to node of Ranvier assembly during myelination of peripheral neurons
Article Snippet: DOI: https://doi.org/10.7554/eLife.68089 17 of 29 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Caspr (rabbit polyclonal) DR Colman 1:5000 Antibody Caspr (guinea-pig polyclonal) M Bhat, University of Texas, San Antonio 1:400 Antibody MBP (rabbit polyclonal) Vouyioukiis and Brophy, 1993 PJ Brophy, pep7 1:1000 Antibody Periaxin (rabbit polyclonal) Gillespie et al., 1994 PJ Brophy, Repeat region 1:5000 Antibody pERM (rabbit polyclonal) Cell Signalling Technologies Cat# 3141 1:200 Antibody Dystrophin (mouse monoclonal) Sigma-Aldrich (MANDRA1) Cat# D8043 1:200 Antibody Radixin (rabbit polyclonal) Sherman et al., 2012 P Brophy, RAD4 1:500 Antibody Neurofascin-Pan (rabbit polyclonal) Tait et al., 2000 PJ Brophy, NFC 1:2000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 488 Invitrogen Cat# A-21121 1:1000 Antibody Goat Anti-rabbit Alexa Fluor 647 Invitrogen Cat# A-32733 1:1000 Antibody Donkey Anti-rabbit Alexa Fluor 594 Jackson ImmunoResearch Cat# 111-585-14 1:1000 Antibody Donkey Anti-chicken Alexa Fluor 488 Jackson ImmunoResearch Cat# 703-545-155 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 568 Invitrogen Cat# A-21134 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 647 Invitrogen Cat# A-21241 1:1000 Antibody Goat Anti-mouse IgG2b Alexa Fluor 488 Invitrogen Cat# A-21141 1:1000 Antibody Anti-mouse IgG1 Alexa Fluor 594 Invitrogen Cat# A-21125 1:1000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 647 Invitrogen Cat# A-21240 1:1000 Antibody Goat Anti-mouse IgG2b DyLight 405 Jackson ImmunoResearch Cat# 115-475-207 1:100 Antibody Goat Anti-guinea pig Alexa Fluor 594 Invitrogen Cat# A-11076 1:8000 Antibody Goat Anti-rabbit Alexa Fluor 488 Invitrogen Cat# 710369 1:1000 Antibody Goat Anti-chicken Alexa-Fluor 647 Invitrogen Cat# A-21449 1:1000 Chemical compound, drug Phalloidin AlexaFluor 568 Invitrogen Cat# A-12380 1:50 Chemical compound, drug DAPI (4 0, 6-diamidino-2-phenylindole) Sigma-Aldrich Cat# D9542 1 mg/ml Chemical compound, drug BrainStain fluorescent dye mix ThermoFisher Cat# B34650 1:300 Chemical compound, drug DMSO Sigma-Aldrich Cat# D2650 Chemical compound, drug Poly-D-lysine Sigma-Aldrich Cat# P6407 Continued on next page Malavasi et al. eLife 2021;10:e68089.
Selection:Article Title: The Statistical Structure of the Hippocampal Code for Space as a Function of Time, Context, and Value.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GAD67, clone 1G10.2 (monoclonal antibody, mouse) Millipore Cat# MAB5406; RRID: AB_2278725 Goat anti-mouse IgG2a cross-adsorbed secondary antibody, Alexa Fluor 647 conjugated Thermo Fisher Scientific Cat# A-21241; RRID: AB_2535810 Experimental Models: Organisms/Strains Mouse: C57BL/6J-Tg(Thy1-GCaMP6f)GP5.17Dkim/J Janelia GENIE Project JAX: 025393 Mouse: C57BL/6 Charles River Laboratories C57BL/6NCrl Software and Algorithms MouseoVeR / Jovian (for virtual reality) Cohen et al., 2017 https://github.com/JaneliaSciComp/ CohenBolstadLee_eLife2017 MOCO (motion correction for imaging) Dubbs et al., 2016 https://github.com/NTCColumbia/moco ROI selection This paper https://github.com/LeeA-Lab/2P_ calcium_imaging
Article Title: Dynamic early clusters of nodal proteins contribute to node of Ranvier assembly during myelination of peripheral neurons
Article Snippet: DOI: https://doi.org/10.7554/eLife.68089 17 of 29 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Caspr (rabbit polyclonal) DR Colman 1:5000 Antibody Caspr (guinea-pig polyclonal) M Bhat, University of Texas, San Antonio 1:400 Antibody MBP (rabbit polyclonal) Vouyioukiis and Brophy, 1993 PJ Brophy, pep7 1:1000 Antibody Periaxin (rabbit polyclonal) Gillespie et al., 1994 PJ Brophy, Repeat region 1:5000 Antibody pERM (rabbit polyclonal) Cell Signalling Technologies Cat# 3141 1:200 Antibody Dystrophin (mouse monoclonal) Sigma-Aldrich (MANDRA1) Cat# D8043 1:200 Antibody Radixin (rabbit polyclonal) Sherman et al., 2012 P Brophy, RAD4 1:500 Antibody Neurofascin-Pan (rabbit polyclonal) Tait et al., 2000 PJ Brophy, NFC 1:2000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 488 Invitrogen Cat# A-21121 1:1000 Antibody Goat Anti-rabbit Alexa Fluor 647 Invitrogen Cat# A-32733 1:1000 Antibody Donkey Anti-rabbit Alexa Fluor 594 Jackson ImmunoResearch Cat# 111-585-14 1:1000 Antibody Donkey Anti-chicken Alexa Fluor 488 Jackson ImmunoResearch Cat# 703-545-155 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 568 Invitrogen Cat# A-21134 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 647 Invitrogen Cat# A-21241 1:1000 Antibody Goat Anti-mouse IgG2b Alexa Fluor 488 Invitrogen Cat# A-21141 1:1000 Antibody Anti-mouse IgG1 Alexa Fluor 594 Invitrogen Cat# A-21125 1:1000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 647 Invitrogen Cat# A-21240 1:1000 Antibody Goat Anti-mouse IgG2b DyLight 405 Jackson ImmunoResearch Cat# 115-475-207 1:100 Antibody Goat Anti-guinea pig Alexa Fluor 594 Invitrogen Cat# A-11076 1:8000 Antibody Goat Anti-rabbit Alexa Fluor 488 Invitrogen Cat# 710369 1:1000 Antibody Goat Anti-chicken Alexa-Fluor 647 Invitrogen Cat# A-21449 1:1000 Chemical compound, drug Phalloidin AlexaFluor 568 Invitrogen Cat# A-12380 1:50 Chemical compound, drug DAPI (4 0, 6-diamidino-2-phenylindole) Sigma-Aldrich Cat# D9542 1 mg/ml Chemical compound, drug BrainStain fluorescent dye mix ThermoFisher Cat# B34650 1:300 Chemical compound, drug DMSO Sigma-Aldrich Cat# D2650 Chemical compound, drug Poly-D-lysine Sigma-Aldrich Cat# P6407 Continued on next page Malavasi et al. eLife 2021;10:e68089.
Incubation:Article Title: The Statistical Structure of the Hippocampal Code for Space as a Function of Time, Context, and Value.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GAD67, clone 1G10.2 (monoclonal antibody, mouse) Millipore Cat# MAB5406; RRID: AB_2278725 Goat anti-mouse IgG2a cross-adsorbed secondary antibody, Alexa Fluor 647 conjugated Thermo Fisher Scientific Cat# A-21241; RRID: AB_2535810 Experimental Models: Organisms/Strains Mouse: C57BL/6J-Tg(Thy1-GCaMP6f)GP5.17Dkim/J Janelia GENIE Project JAX: 025393 Mouse: C57BL/6 Charles River Laboratories C57BL/6NCrl Software and Algorithms MouseoVeR / Jovian (for virtual reality) Cohen et al., 2017 https://github.com/JaneliaSciComp/ CohenBolstadLee_eLife2017 MOCO (motion correction for imaging) Dubbs et al., 2016 https://github.com/NTCColumbia/moco ROI selection This paper https://github.com/LeeA-Lab/2P_ calcium_imaging
Article Title: Dynamic early clusters of nodal proteins contribute to node of Ranvier assembly during myelination of peripheral neurons
Article Snippet: DOI: https://doi.org/10.7554/eLife.68089 17 of 29 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Caspr (rabbit polyclonal) DR Colman 1:5000 Antibody Caspr (guinea-pig polyclonal) M Bhat, University of Texas, San Antonio 1:400 Antibody MBP (rabbit polyclonal) Vouyioukiis and Brophy, 1993 PJ Brophy, pep7 1:1000 Antibody Periaxin (rabbit polyclonal) Gillespie et al., 1994 PJ Brophy, Repeat region 1:5000 Antibody pERM (rabbit polyclonal) Cell Signalling Technologies Cat# 3141 1:200 Antibody Dystrophin (mouse monoclonal) Sigma-Aldrich (MANDRA1) Cat# D8043 1:200 Antibody Radixin (rabbit polyclonal) Sherman et al., 2012 P Brophy, RAD4 1:500 Antibody Neurofascin-Pan (rabbit polyclonal) Tait et al., 2000 PJ Brophy, NFC 1:2000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 488 Invitrogen Cat# A-21121 1:1000 Antibody Goat Anti-rabbit Alexa Fluor 647 Invitrogen Cat# A-32733 1:1000 Antibody Donkey Anti-rabbit Alexa Fluor 594 Jackson ImmunoResearch Cat# 111-585-14 1:1000 Antibody Donkey Anti-chicken Alexa Fluor 488 Jackson ImmunoResearch Cat# 703-545-155 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 568 Invitrogen Cat# A-21134 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 647 Invitrogen Cat# A-21241 1:1000 Antibody Goat Anti-mouse IgG2b Alexa Fluor 488 Invitrogen Cat# A-21141 1:1000 Antibody Anti-mouse IgG1 Alexa Fluor 594 Invitrogen Cat# A-21125 1:1000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 647 Invitrogen Cat# A-21240 1:1000 Antibody Goat Anti-mouse IgG2b DyLight 405 Jackson ImmunoResearch Cat# 115-475-207 1:100 Antibody Goat Anti-guinea pig Alexa Fluor 594 Invitrogen Cat# A-11076 1:8000 Antibody Goat Anti-rabbit Alexa Fluor 488 Invitrogen Cat# 710369 1:1000 Antibody Goat Anti-chicken Alexa-Fluor 647 Invitrogen Cat# A-21449 1:1000 Chemical compound, drug Phalloidin AlexaFluor 568 Invitrogen Cat# A-12380 1:50 Chemical compound, drug DAPI (4 0, 6-diamidino-2-phenylindole) Sigma-Aldrich Cat# D9542 1 mg/ml Chemical compound, drug BrainStain fluorescent dye mix ThermoFisher Cat# B34650 1:300 Chemical compound, drug DMSO Sigma-Aldrich Cat# D2650 Chemical compound, drug Poly-D-lysine Sigma-Aldrich Cat# P6407 Continued on next page Malavasi et al. eLife 2021;10:e68089.
Blocking Assay:Article Title: The Statistical Structure of the Hippocampal Code for Space as a Function of Time, Context, and Value.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GAD67, clone 1G10.2 (monoclonal antibody, mouse) Millipore Cat# MAB5406; RRID: AB_2278725 Goat anti-mouse IgG2a cross-adsorbed secondary antibody, Alexa Fluor 647 conjugated Thermo Fisher Scientific Cat# A-21241; RRID: AB_2535810 Experimental Models: Organisms/Strains Mouse: C57BL/6J-Tg(Thy1-GCaMP6f)GP5.17Dkim/J Janelia GENIE Project JAX: 025393 Mouse: C57BL/6 Charles River Laboratories C57BL/6NCrl Software and Algorithms MouseoVeR / Jovian (for virtual reality) Cohen et al., 2017 https://github.com/JaneliaSciComp/ CohenBolstadLee_eLife2017 MOCO (motion correction for imaging) Dubbs et al., 2016 https://github.com/NTCColumbia/moco ROI selection This paper https://github.com/LeeA-Lab/2P_ calcium_imaging
Article Title: Dynamic early clusters of nodal proteins contribute to node of Ranvier assembly during myelination of peripheral neurons
Article Snippet: DOI: https://doi.org/10.7554/eLife.68089 17 of 29 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Caspr (rabbit polyclonal) DR Colman 1:5000 Antibody Caspr (guinea-pig polyclonal) M Bhat, University of Texas, San Antonio 1:400 Antibody MBP (rabbit polyclonal) Vouyioukiis and Brophy, 1993 PJ Brophy, pep7 1:1000 Antibody Periaxin (rabbit polyclonal) Gillespie et al., 1994 PJ Brophy, Repeat region 1:5000 Antibody pERM (rabbit polyclonal) Cell Signalling Technologies Cat# 3141 1:200 Antibody Dystrophin (mouse monoclonal) Sigma-Aldrich (MANDRA1) Cat# D8043 1:200 Antibody Radixin (rabbit polyclonal) Sherman et al., 2012 P Brophy, RAD4 1:500 Antibody Neurofascin-Pan (rabbit polyclonal) Tait et al., 2000 PJ Brophy, NFC 1:2000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 488 Invitrogen Cat# A-21121 1:1000 Antibody Goat Anti-rabbit Alexa Fluor 647 Invitrogen Cat# A-32733 1:1000 Antibody Donkey Anti-rabbit Alexa Fluor 594 Jackson ImmunoResearch Cat# 111-585-14 1:1000 Antibody Donkey Anti-chicken Alexa Fluor 488 Jackson ImmunoResearch Cat# 703-545-155 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 568 Invitrogen Cat# A-21134 1:1000 Antibody Goat Anti-mouse IgG2a Alexa Fluor 647 Invitrogen Cat# A-21241 1:1000 Antibody Goat Anti-mouse IgG2b Alexa Fluor 488 Invitrogen Cat# A-21141 1:1000 Antibody Anti-mouse IgG1 Alexa Fluor 594 Invitrogen Cat# A-21125 1:1000 Antibody Goat Anti-mouse IgG1 Alexa Fluor 647 Invitrogen Cat# A-21240 1:1000 Antibody Goat Anti-mouse IgG2b DyLight 405 Jackson ImmunoResearch Cat# 115-475-207 1:100 Antibody Goat Anti-guinea pig Alexa Fluor 594 Invitrogen Cat# A-11076 1:8000 Antibody Goat Anti-rabbit Alexa Fluor 488 Invitrogen Cat# 710369 1:1000 Antibody Goat Anti-chicken Alexa-Fluor 647 Invitrogen Cat# A-21449 1:1000 Chemical compound, drug Phalloidin AlexaFluor 568 Invitrogen Cat# A-12380 1:50 Chemical compound, drug DAPI (4 0, 6-diamidino-2-phenylindole) Sigma-Aldrich Cat# D9542 1 mg/ml Chemical compound, drug BrainStain fluorescent dye mix ThermoFisher Cat# B34650 1:300 Chemical compound, drug DMSO Sigma-Aldrich Cat# D2650 Chemical compound, drug Poly-D-lysine Sigma-Aldrich Cat# P6407 Continued on next page Malavasi et al. eLife 2021;10:e68089.
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